PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_77.14
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family YABBY
Protein Properties Length: 49aa    MW: 5489.34 Da    PI: 5.5869
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_77.14genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY271.4e-0812453063
                        YABBY 30 slfkvvtvrCGhCtsllsvnlakasqllaaeshl 63
                                  lf+++tvrCGhCt++  v++  a q   +++++
  evm.model.supercontig_77.14 12 NLFEIMTVRCGHCTNVCYVDMGAAFQYSMSSKDV 45
                                 589******************9988776666654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.1E-71245IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    Send to blast
MQYNTELFTA INLFEIMTVR CGHCTNVCYV DMGAAFQYSM SSKDVQVK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_77.14
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895008.19e-19axial regulator YABBY 5-like isoform X2
STRINGevm.model.supercontig_77.149e-29(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-08YABBY family protein