PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_77.16

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

YABBY

Protein Properties

Length: 66aa MW: 7426.69 Da PI: 7.7384

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_77.16	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	58.2	3.7e-18	7	63	5	61
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaes 61 + e++Cy+ C++C+ ++av vP +sl+ +vt+rC hC++l svn+a + q +++++ evm.model.supercontig_77.16 7 FECERLCYMPCKHCKIVVAVRVPCSSLYDIVTIRCVHCSNLWSVNMAATLQSMSTQD 63 5689*******************************************9999988876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.5E-18	9	62	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 66 aa Download sequence Send to blast
MSSSNGFECE RLCYMPCKHC KIVVAVRVPC SSLYDIVTIR CVHCSNLWSV NMAATLQSMS 60 TQDLHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_77.16

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021895056.1	1e-42	axial regulator YABBY 5-like isoform X1
Swissprot	Q8GW46	1e-22	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A2G5DFY8	3e-22	A0A2G5DFY8_AQUCA; Uncharacterized protein
STRING	evm.model.supercontig_77.16	3e-42	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5538	26	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	5e-25	YABBY family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_77.16

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]