PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_78.76
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 1057aa    MW: 116308 Da    PI: 5.4181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_78.76genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.1e-183783148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  evm.model.supercontig_78.76 37 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                                 799****************************9.************986 PP
2Myb_DNA-binding66.54.8e-2189135148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                  +g+W++eEde+++d+v+++G++ W+tIa++++ gR +kqc++rw+++l
  evm.model.supercontig_78.76  89 KGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                                  79******************************.*************97 PP
3Myb_DNA-binding46.86.7e-15141183145
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                  + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  evm.model.supercontig_78.76 141 KEAWTQDEELTLIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                                  579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.0153283IPR017930Myb domain
SuperFamilySSF466899.33E-163389IPR009057Homeodomain-like
SMARTSM007172.2E-153685IPR001005SANT/Myb domain
PfamPF002499.0E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2439100IPR009057Homeodomain-like
CDDcd001673.71E-144083No hitNo description
PROSITE profilePS5129433.17584139IPR017930Myb domain
SuperFamilySSF466892.7E-3186182IPR009057Homeodomain-like
SMARTSM007171.2E-1988137IPR001005SANT/Myb domain
PfamPF002494.4E-1989135IPR001005SANT/Myb domain
CDDcd001673.04E-1791135No hitNo description
Gene3DG3DSA:1.10.10.601.8E-27101143IPR009057Homeodomain-like
SMARTSM007171.7E-14140188IPR001005SANT/Myb domain
PROSITE profilePS5129418.394140190IPR017930Myb domain
PfamPF002493.7E-13141184IPR001005SANT/Myb domain
CDDcd001673.71E-11143183No hitNo description
Gene3DG3DSA:1.10.10.602.0E-20144190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
MQGEGTISTP AEGLTDGVQR MRHLHGRTSG PTRRSTKGQW TAEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IDLVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQDEEL TLIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKM DSYLASGLLD QYQTLPLVGH QHKPMLSSSS RVQSSGEDSG PKGAADAEDE  240
SECSQASTAV GCSQSTSELP NAIVLPREQF QVPEISCGKK EQSPGAASCS EHYYTSLEDV  300
TFSIPEITCD MVYSSKFPDQ NFSHDVAISG SQDYQFNLQD LPNIASLELG HEPSGLPTHC  360
INANESQEIR NVSFQEPVGL GASAGSEKPA HMLISDDECC RVLFSEAMNE GYYLPGAFTQ  420
GSNMVDMGEC KNSLLCGCSD IQMPETVRNS GSPSCPSRSD IMITSCSRNI TSVPPQFSAH  480
DGTVIYSREP SQLNCHHFEV QDPEFDTSAN DGFIYTNDSA NSPCDDVTGN SCLQEQPYLA  540
KDSLKLVPVN TFASRLDVQH SPPIEDKLNV QTEQQNTGAL CYEPPRFPSL DVPFFSCDLI  600
QSSSDMQQEY SPLGIRQLMI PSINCMTPFR LWDSPSRDGS PDAVLKSAAK TFTGTPSILK  660
KRNRDLLSPL SERRIDKKLE TDMSSSLSKD FSRLDVMFDA SGNHQKSSLL SLSPKQRVSS  720
GPCVKGKENL GLVSDGEQQV NQRDDTLLSN EKVLVETLGD NNSQDKIIPV TVGTDAKGKG  780
VVHPDQHLSG ILIEHNLNDL LLFSPDQVSS KAFRELLSST PTPRSQCRRS LVAASNQAVP  840
SESSSGNQCL ALNSPTLFTK NSDNHLVVDS STQFVPSSTS LEIRVDNVAS DGAIENLSIF  900
GGTPFRRSIE SPSAWKSPWF LNSFVPGPKI NTEITIEDIG FFMSPGDRSY DAIGLMKQLS  960
EHTASAYADA LEVLGNETPE TLLKEKYSHN CNMDKDNNHA PRLENRSDSA AASALPERRT  1020
LDFSDCGTPG KGTESRKSSN SMSFSSPSSY LLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-70371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_78.76
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894927.10.0transcription factor MYB3R-1
TrEMBLA0A2N9J4J10.0A0A2N9J4J1_FAGSY; Uncharacterized protein
STRINGevm.model.supercontig_78.760.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Representative plantOGRP9448613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein