PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.251
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family GeBP
Protein Properties Length: 421aa    MW: 47285.2 Da    PI: 4.5817
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.251genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573123.11.3e-38154249397
                       DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfske 83 
                                  +qrlwse+Dei++L+G+ ++++ktg++p +d+ af+ef+kks++++vsksql +KirrLKkKf+ + +k  k+g+ep+f+k+
  evm.model.supercontig_8.251 154 IQRLWSEDDEIAILKGITEYRSKTGTDPNADMVAFHEFIKKSLHVDVSKSQLHDKIRRLKKKFQVNAEKgEKNGQEPEFAKP 235
                                  79****************************************************************999899********** PP

                       DUF573  84 hdqkifelskkiWg 97 
                                  hd k+f+lskkiW 
  evm.model.supercontig_8.251 236 HDFKCFQLSKKIWA 249
                                  *************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.4E-34155248IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MAPKRHIENP PPVESSEEEE EEEEGEEEEG EEEVEEMEQS EENDVVDEDD NEAVDGEEEK  60
TQAKNPALQT NSALDSGSDS DSEGSLPSPN ISDFTIKPIR SKPMPEPAKP NKAASKAGSK  120
RAADTQPSET EPKKKEKKTQ NGAEEEDAKK GSGIQRLWSE DDEIAILKGI TEYRSKTGTD  180
PNADMVAFHE FIKKSLHVDV SKSQLHDKIR RLKKKFQVNA EKGEKNGQEP EFAKPHDFKC  240
FQLSKKIWAS SKESIDTAVK NNSNSVNGIN KKAKYSNGGT NTNSKLSDEV NVPITLGLPS  300
REASGKRQSQ IMVSRKATEE EEKEDAKIKV DAEEPNGDLD DFWSRYPCFS ESLNSEQFPM  360
PDFSVKFLKD RMKEIGNEKA KEMEDKWRKL REEELKLYIK RIDLVKEQAT LVVDAMKLDS  420
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.251
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907473.10.0STOREKEEPER protein-like
STRINGevm.model.supercontig_8.2510.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Representative plantOGRP1074824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-29DNA-binding storekeeper protein-related transcriptional regulator