PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_8.253
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bHLH
Protein Properties Length: 348aa    MW: 38318 Da    PI: 6.5072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_8.253genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.81.7e-07204248655
                                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                  ne  r+RR ri ++   L++l+P++     kK++ a+ Le A +Y+  Lq
  evm.model.supercontig_8.253 204 NELPRQRRPRISDKTRSLQKLMPSD-----KKMDTATLLEDAYKYVEFLQ 248
                                  8999********************9.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.576198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-10201256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.93E-7201252No hitNo description
PfamPF000103.9E-5204248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-9204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.4E-7204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEMRDIKPVL TADHHLTASA SSSPALPFFP GENVSDDSTF FSSPDSTILQ PLIPLPYEYF  60
STSLSPNFYA DDYPPLAYDT PAHHFLQFPD NFSSSSCSAL TSPLYLDSQA AFDSNINLLD  120
FFSKPAPDLF CNPGTSSSFT HLPHLHSIEH AQLNHSSSSS SARNKRARFD YAAASSSQSL  180
DSILQSNFNF QSYTSAPPSV TPSNELPRQR RPRISDKTRS LQKLMPSDKK MDTATLLEDA  240
YKYVEFLQAQ IKALQWMPVG SSFSGTGGGA LTEVGAGVNN NVLGSLETLN RQQLLQVMVN  300
SPVAQTMLYS KGFCVFSHEQ LLLLRRIAQK KTSLLEQMLF DPSKSCR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_8.253
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907394.10.0transcription factor bHLH117
STRINGevm.model.supercontig_8.2530.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Representative plantOGRP1126656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.11e-30bHLH family protein