PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_8.51

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 400aa MW: 45458.8 Da PI: 9.9513

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_8.51	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.5	7.3e-26	11	101	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkl 81 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++ +++ +kw+vtk+ evm.model.supercontig_8.51 11 EFYIAYGRRIGFTVRIHHNRRSRINNVVIGQDFVCSKEGFREKKYMYRKDR-VlpPPPITREGCPAMLRIALRDGAKWVVTKF 92 6****************************************99983333.244899********************* PP FAR1 82 eleHnHela 90 ++eHnH+l evm.model.supercontig_8.51 93 VKEHNHTLI 101 ****996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-23	11	101	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MEFRSRDAAQ EFYIAYGRRI GFTVRIHHNR RSRINNVVIG QDFVCSKEGF REKKYMYRKD 60 RVLPPPPITR EGCPAMLRIA LRDGAKWVVT KFVKEHNHTL ISPGEVPWRG SAKDLISEDG 120 KDRRIRELTN ELHSERQRCK RRCAVYQGQL RAVLKFVGEH TDQLSIRVND IVKNVKELED 180 DRPLYLAQIK QSIKLTRRSK QAALMSDGSQ PVDEANQEPQ QLEKRNQLTR GLEIYRNALD 240 DIVNANGLFT IAVFVGLSLA QPGQRSLEER HECDADMTLG KQLVVSEVIA FACYLLSSLV 300 AKALKIHLSV CTPEQYEQFK YKVIRGSLLV LSVWSSIFGC IFLTISMVHV IQIRVGKLSC 360 GSVYTLRSAG TLIALVALAL FIYITFTMHA VYVSMNGRT*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MEFRSRDAAQ EFYIAYGRRI GFTVRIHHNR RSRINNVVIG QDFVCSKEGF REKKYMYRKD  60
RVLPPPPITR EGCPAMLRIA LRDGAKWVVT KFVKEHNHTL ISPGEVPWRG SAKDLISEDG  120
KDRRIRELTN ELHSERQRCK RRCAVYQGQL RAVLKFVGEH TDQLSIRVND IVKNVKELED  180
DRPLYLAQIK QSIKLTRRSK QAALMSDGSQ PVDEANQEPQ QLEKRNQLTR GLEIYRNALD  240
DIVNANGLFT IAVFVGLSLA QPGQRSLEER HECDADMTLG KQLVVSEVIA FACYLLSSLV  300
AKALKIHLSV CTPEQYEQFK YKVIRGSLLV LSVWSSIFGC IFLTISMVHV IQIRVGKLSC  360
GSVYTLRSAG TLIALVALAL FIYITFTMHA VYVSMNGRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	140	RQRCKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_8.51

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	evm.model.supercontig_8.51	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-32	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_8.51