PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_8.53

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 212aa MW: 24594 Da PI: 9.4625

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_8.53	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.3	1.7e-30	41	129	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 fY++YA+++GF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra tr gCka+++vkk+k+gkw+vt++++e evm.model.supercontig_8.53 41 FYDAYATRLGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAITREGCKAMIVVKKDKSGKWVVTRFVKE 122 9*****************************************99.9******************************* PP FAR1 85 HnHelap 91 HnH+l+p evm.model.supercontig_8.53 123 HNHQLVP 129 ***86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.8E-29	41	129	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MAEDGEMIES SNGKGLANEE CSDMEPYQGM EFESEEAAKV FYDAYATRLG FIMRVDAFRR 60 SMRDGKVVWR RLVCNKEGFR KLRPRRSENR KPRAITREGC KAMIVVKKDK SGKWVVTRFV 120 KEHNHQLVPI PANGRRSIVL SQTPDEKDIK IRELTAELQR ERKRCAAYQE QLDSILRDME 180 EHSDHLTRNI DDIVQSVREI ESKRVANPHS K*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_8.53

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907124.1	1e-156	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021907125.1	1e-156	protein FAR1-RELATED SEQUENCE 5 isoform X2
Swissprot	Q9SZL8	1e-33	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	F6I1W9	1e-129	F6I1W9_VITVI; Uncharacterized protein
STRING	evm.model.supercontig_8.53	1e-156	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13524	22	27
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-96	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_8.53

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]