PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_8.54

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 235aa MW: 26528.9 Da PI: 5.8334

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_8.54	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.1	5.4e-27	68	157	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 kfY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + +++r++ r gCka++ vk+ek+gkw+vt++++ evm.model.supercontig_8.54 68 KFYVEYARRVGFVVRVMQRRRSGIDGRTLARRLGCNKQGFSPNQKGALGPDKKPRPSAREGCKATILVKMEKSGKWVVTRFVK 150 6******************************************************************************** PP FAR1 84 eHnHela 90 +HnH+l+ evm.model.supercontig_8.54 151 DHNHPLV 157 ***96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-25	68	157	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MQVDLDKEEV AADSSIEEKA YELESGEGDT ERGEIGKSEG GEVGELERDE VLEPYVGMEF 60 ESEDDARKFY VEYARRVGFV VRVMQRRRSG IDGRTLARRL GCNKQGFSPN QKGALGPDKK 120 PRPSAREGCK ATILVKMEKS GKWVVTRFVK DHNHPLVVTA NGFSTSGDKD KKIKELSMEL 180 AHQEQLCAAY REKLLSFMNN VEEQTEELSS KIQVIVDNVR KLESEMLRHS QSRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_8.54

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907457.1	1e-170	protein FAR1-RELATED SEQUENCE 12-like
TrEMBL	A0A061DUS5	1e-123	A0A061DUS5_THECC; Far-red impaired responsive family protein isoform 2
STRING	evm.model.supercontig_8.54	1e-171	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3918	28	55
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	1e-76	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_8.54