PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_80.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

HD-ZIP

Protein Properties

Length: 205aa MW: 23909.7 Da PI: 7.777

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_80.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	20	72	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t+eq++ Le+ F n+++ e++ +LA++lgL+ r+V +W+qN+Ra++k evm.model.supercontig_80.1 20 KKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWK 72 4579************************************************9 PP
2	HD-ZIP_I/II	107.1	1.3e-34	19	108	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 +k+rl++eqv+lLE+sF ++kLepe Kv+la++Lgl pr va+W+qn+RAR+kt+ lE+dy++L+ ++++ +e+++Le++v evm.model.supercontig_80.1 19 NKKRLTHEQVRLLERSFCGNKKLEPEMKVQLASQLGLPPRRVAIWYQNKRARWKTQSLEVDYNTLQVKLENALAEKRQLERDV 101 79********************************************************************************* PP HD-ZIP_I/II 85 eeLreel 91 + L+ el evm.model.supercontig_80.1 102 RLLQVEL 108 *999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-17	8	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.916	14	74	IPR001356	Homeobox domain
SMART	SM00389	3.9E-16	16	78	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-16	20	72	IPR001356	Homeobox domain
CDD	cd00086	2.13E-14	20	75	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-19	21	81	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	49	72	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MEYFHGTQQN PKQFGKLHNK KRLTHEQVRL LERSFCGNKK LEPEMKVQLA SQLGLPPRRV 60 AIWYQNKRAR WKTQSLEVDY NTLQVKLENA LAEKRQLERD VRLLQVELGK AQEMLFEFSH 120 HRQQQQQHQL MQSHHHHHHV YSNPDHHNNN GYTVMVNNCS TSNSCEDQGF SSSFHHDQDV 180 VSDEDLRLDE LYACLIGANG SSST*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_80.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894742.1	1e-152	homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A067LF56	4e-60	A0A067LF56_JATCU; Uncharacterized protein
STRING	evm.model.supercontig_80.1	1e-152	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	2e-37	homeobox protein 52

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_80.1