PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_80.115
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family B3
Protein Properties Length: 320aa    MW: 35528.2 Da    PI: 5.151
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_80.115genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10214311195
                                   EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--T CS
                            B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkl.iyrkksgr.yvltkGWkeFvkangLke 76 
                                   f+kvl+psd+    g+l lpk + e +  +++  +++ l ++d +g  W++ +  ++ ++++ yvl+ G  ++    gLk 
  evm.model.supercontig_80.115 214 FEKVLVPSDADPCrGMLFLPKLYSEIYfpELPLGQKMPLLVQDITGVNWQFVYgVWWMNGRKiYVLE-GFDGYMTLMGLKP 293
                                   89*******997647889999998666**777778899***************87799999945555.************* PP

                                   T-EEEEEE-SSSEE..EEE CS
                            B3  77 gDfvvFkldgrsefelvvk 95 
                                   gD v+F++++  e++l ++
  evm.model.supercontig_80.115 294 GDKVTFYRTE-PEKKLIIR 311
                                   *******654.56656655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.5E-13212314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-14212311IPR015300DNA-binding pseudobarrel domain
CDDcd100176.27E-11212312No hitNo description
PfamPF023627.9E-8214311IPR003340B3 DNA binding domain
SMARTSM010190.0023214316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MHTIGYKSNV WLAPSFGEIK FNIDASALGK LGLTMVGGVL RNAQGFMKCM FSTIVGVMDL  60
NQAELLAINE PSLSWLLTTG LGTILLLWKV TPLWLGWIKN NSILWRLNSV ANSIVNGCGQ  120
VESDSYSILN ETNIGMMGPG APAHAVGPTP EIGEQFHGAS LYGADLFHED DMYSQIEEET  180
SGWNLLYPHN LPEITSGRLP EININSKPAL IPLFEKVLVP SDADPCRGML FLPKLYSEIY  240
FPELPLGQKM PLLVQDITGV NWQFVYGVWW MNGRKIYVLE GFDGYMTLMG LKPGDKVTFY  300
RTEPEKKLII RLQKAPDNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-211923171125B3 domain-containing transcription repressor VAL1
5yzz_C2e-211923171125B3 domain-containing transcription repressor VAL1
5z00_C2e-211923171125B3 domain-containing transcription repressor VAL1
5z00_G2e-211923171125B3 domain-containing transcription repressor VAL1
5z00_K2e-211923171125B3 domain-containing transcription repressor VAL1
5z00_M2e-211923171125B3 domain-containing transcription repressor VAL1
6j9a_A2e-211923172126B3 domain-containing transcription repressor VAL1
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_80.115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894785.11e-144B3 domain-containing protein Os07g0563300-like isoform X2
STRINGevm.model.supercontig_80.1150.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.13e-26HSI2-like 1