PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_80.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HB-other
Protein Properties Length: 111aa    MW: 12372.6 Da    PI: 11.5589
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_80.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171e-0537533955
                                 S-HHHHHHHHHHHHHHH CS
                     Homeobox 39 LterqVkvWFqNrRake 55
                                 ++ +qV +WFqNrR+  
  evm.model.supercontig_80.16 37 VQFKQVWNWFQNRRYAI 53
                                 6669**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-5160IPR009057Homeodomain-like
PROSITE profilePS500718.859156IPR001356Homeobox domain
SuperFamilySSF466897.27E-8757IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MEAILQQHNN AMPLRDILVG LAERFSESAD RKGKIAVQFK QVWNWFQNRR YAIRAKSSKA  60
PGKLNVSSMP RDDPPLVRNM PQPLVAPIPT PMPAHMPAQI PAPSVIRILI *
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_80.16
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894735.12e-70protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_021894736.11e-70protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-39SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A061FF916e-45A0A061FF91_THECC; DNA binding protein, putative
STRINGevm.model.supercontig_80.164e-74(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3381022
Representative plantOGRP16411419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-42sequence-specific DNA binding transcription factors;sequence-specific DNA binding