PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_81.123

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

GRAS

Protein Properties

Length: 150aa MW: 17731.5 Da PI: 8.4686

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_81.123	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	136.7	2.5e-42	2	143	232	373
GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 ++++P+++v+ + +n++ F++rf eal ++salfd ++a+lpre+ +r ++Ere+ gre++nv+aceg er+er e++ evm.model.supercontig_81.123 2 REINPDIFVHNIVNGAYNAPFFVTRFKEALFHFSALFDKFDATLPREDPARLMLEREFYGREVMNVIACEGLERVERPENY 82 89***************************************************************************** PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++W+ r+++aGFk++pl+++ +k+ ++ lr ++ + + ++e+ ++++gWk+r +++ S+W evm.model.supercontig_81.123 83 KQWQIRVMRAGFKQLPLDQELMKKFRAKLRACYHKDFVIDEDGSWFLQGWKGRIVYASSCW 143 *****************************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	25.517	1	124	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.4E-40	2	143	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MREINPDIFV HNIVNGAYNA PFFVTRFKEA LFHFSALFDK FDATLPREDP ARLMLEREFY 60 GREVMNVIAC EGLERVERPE NYKQWQIRVM RAGFKQLPLD QELMKKFRAK LRACYHKDFV 120 IDEDGSWFLQ GWKGRIVYAS SCWVPVKES*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_81.123

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894473.1	1e-108	scarecrow-like protein 34
Swissprot	Q3EDH0	8e-70	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A2N9G5S7	7e-81	A0A2N9G5S7_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_81.123	1e-108	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15599	6	16
Representative plant	OGRP18124	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	3e-72	GRAS family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_81.123