PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_81.127
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 674aa    MW: 74989.8 Da    PI: 9.5881
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_81.127genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07572621147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                   r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  evm.model.supercontig_81.127 572 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 621
                                   6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.4E-5377449IPR029071Ubiquitin-related domain
PROSITE profilePS500539.199381449IPR000626Ubiquitin domain
PROSITE profilePS5129414.733567626IPR017930Myb domain
SMARTSM007172.0E-7571624IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10572622IPR009057Homeodomain-like
SuperFamilySSF466891.14E-15573654IPR009057Homeodomain-like
CDDcd116601.02E-16573623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MVLQNRLEYG FNGYQVPATP RASRSTRRRS SFKKKPEDNQ MCAFDLLATV AGKLLLEKES  60
SPMSSNMSSD KDQYAAVKHA VKKECQGEDK LVKAEACDQG SCDRRYFVSE PVSQAPINHS  120
YRESPGPEND HCRFTSAVAT SNCTERFDTQ KLVKGKTKNE IGSFDNKVGV GPSGHGKAGD  180
CNKTDGDAKK IVKDKLHGNE KALFGIGTDS CSLRDPVVRA GKLSGLVSLD SSVQEREEHV  240
PRSSFPGSWD DVNFVSKDDD ESSSGCTHPS ITKKLFRPTP RLGDRRIRKV LASKYWKVAP  300
KLKDVTFSNT NVDFKPAYWN RKNSYKRLRS DRNYPFKKRK FFDCISVSNS DEGISSECVS  360
DAPEKGIIGD DFGSHPKTHE VKLRIKSFRV PELFIELPET ATVGSLKRTV MEAVTAILGG  420
ELRVGVFLQG KKVRDDNKTL LQTGISQDNQ SDSLGFCLEP NPSQASKPLC PEESPFLLPC  480
GVPQPLSRYP PAPGMIQQDT RNVMPEPRVA NTGNSIDSDH DSAPSPTDMS VDKSTTDSRA  540
LVAVPSVNVE TLAVVPVHRK SKRSEVVQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL  600
RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA YWSQQQAKQQ  660
LKQQQQSENC LLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A7e-585566621107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280289RLGDRRIRKV
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_81.127
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9092060.0EU909206.1 Carica papaya putative double-strand telomere binding protein 2 (TRFL2) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894512.10.0telomere repeat-binding protein 5 isoform X2
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLB5TFM60.0B5TFM6_CARPA; Putative double-strand telomere binding protein 2
STRINGevm.model.supercontig_81.1270.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-171TRF-like 2