PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_817.1

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

G2-like

Protein Properties

Length: 74aa MW: 7963.72 Da PI: 4.564

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_817.1	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	42.4	1.6e-13	43	67	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt eLHerFv+av+qLGG++ evm.model.supercontig_817.1 43 KPRLRWTAELHERFVDAVTQLGGPD 67 79*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.3E-12	40	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.45E-5	42	68	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.4E-8	43	67	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 74 aa Download sequence Send to blast
MYSAIHSLPL DGGVVGGHPD YQGSLDGTNL PGDACLVLTT DPKPRLRWTA ELHERFVDAV 60 TQLGGPDIDS MLRX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_817.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021900523.1	1e-43	protein PHR1-LIKE 2-like
Swissprot	Q94A57	1e-36	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A2P5CRT1	1e-36	A0A2P5CRT1_PARAD; Octamer-binding transcription factor
TrEMBL	A0A2P5F3X6	1e-36	A0A2P5F3X6_TREOI; Octamer-binding transcription factor
STRING	evm.model.supercontig_817.1	8e-47	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5044	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	6e-39	G2-like family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_817.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]