PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_83.103
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HD-ZIP
Protein Properties Length: 183aa    MW: 20691.4 Da    PI: 6.873
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_83.103genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-181465556
                                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                   ++t++ql  Le+ F+ n+++++e++ +LA+ lgL+ r+V +W+qNrRa++k
  evm.model.supercontig_83.103 14 KRLTQDQLMLLEKSFNTNHNLNTERKLKLAQMLGLPPRKVAIWYQNRRARQK 65
                                  579************************************************9 PP
2HD-ZIP_I/II98.56.5e-3213102392
                   HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                    +rl+++q+ lLE+sF+++++L++erK +la+ Lgl pr+va+W+qnrRAR kt+ +E dy++L+ ++d++ +e++rLeke
  evm.model.supercontig_83.103  13 NKRLTQDQLMLLEKSFNTNHNLNTERKLKLAQMLGLPPRKVAIWYQNRRARQKTHTIELDYKTLQLELDNVLAEKTRLEKE 93 
                                   79******************************************************************************* PP

                   HD-ZIP_I/II  84 veeLreelk 92 
                                   v+ Lr++l+
  evm.model.supercontig_83.103  94 VDILRHQLD 102
                                   *****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.52767IPR001356Homeobox domain
SuperFamilySSF466891.67E-17975IPR009057Homeodomain-like
CDDcd000863.41E-161067No hitNo description
SMARTSM003892.6E-151071IPR001356Homeobox domain
PfamPF000461.1E-151465IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-171665IPR009057Homeodomain-like
PROSITE patternPS0002704265IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDLNSHSTQK QENKRLTQDQ LMLLEKSFNT NHNLNTERKL KLAQMLGLPP RKVAIWYQNR  60
RARQKTHTIE LDYKTLQLEL DNVLAEKTRL EKEVDILRHQ LDTTRSMLLQ SNPSAAIRLP  120
SGSSCIDEDH ASSNCPANMT FSHNDDSIFI VEELYSCLIG PQGQPHTIGA VNNLLDCSAV  180
PQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_83.103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021894295.11e-134homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A2H5PT841e-58A0A2H5PT84_CITUN; Uncharacterized protein
STRINGevm.model.supercontig_83.1031e-133(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2299333
Representative plantOGRP1636623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31homeobox protein 52