PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_84.88

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 260aa MW: 28822.3 Da PI: 8.1439

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_84.88	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31	8.4e-10	32	80	2	50
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktek 50 +Y+eYAk+vGF + k +s++s+ ++e+++++f C ++ +e+ ++ ++ evm.model.supercontig_84.88 32 YYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRKHAISERLDELQS 80 9***********************************9998888777333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-8	32	86	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MDTSNVPVST GNTVLEPRND MEFESHEAAY SYYKEYAKSV GFGTAKLSSR RSRASKEFID 60 AKFSCIRKHA ISERLDELQS KVRRYNDLCR RAIILGEEGS LSQESYDIAL CAIREALKQC 120 AIVNNSIEND ARPSNPAIQT VCTVEEGNQC SITSKEKVSD PTKYTGTNKT PRRTEAGRDS 180 NQSSASGKGK QVPQFGVSGV GNQDGLHQME LVDMRPAQLH NVMPPQLHNI MPAMFHNVPP 240 PQFQNVAPPR HLHDNRPPH*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_84.88

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021894136.1	1e-138	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_021894137.1	1e-138	protein FAR1-RELATED SEQUENCE 4 isoform X1
Refseq	XP_021894138.1	1e-138	protein FAR1-RELATED SEQUENCE 4 isoform X1
Swissprot	Q6NQJ7	1e-39	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A5BA92	2e-66	A5BA92_VITVI; Uncharacterized protein
STRING	evm.model.supercontig_84.88	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-41	FAR1-related sequence 4

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_84.88

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]