PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_847.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family bZIP
Protein Properties Length: 209aa    MW: 23637.4 Da    PI: 9.9067
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_847.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-104687445
                                 XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                       bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                                  k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  evm.model.supercontig_847.1 46 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 87
                                 6889*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-83790No hitNo description
SMARTSM003384.9E-843106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4154589IPR004827Basic-leucine zipper domain
CDDcd147088.97E-234799No hitNo description
SuperFamilySSF579592.06E-74790No hitNo description
PfamPF001702.4E-74787IPR004827Basic-leucine zipper domain
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141447.6E-33129202IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MADASPRTDI STDVDTDDKY QRSNRGQSTA VVASDSSDRS KDKTDQKTLR RLAQNREAAR  60
KSRLRKKAYV QQLESSRLKL TQLEQELQRA RQQGIFISSS GDQAHSIGGN GAMAFDVEYA  120
RWLEDQNRHI NELRSAVNSH ASDTELRIIV DNIMVHYDEI FRLKSNAAKA DVFHLLSGMW  180
KTPAERCFLW LGGFRSSELL KVTSISKF*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_847.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021899961.11e-153transcription factor TGA6-like
RefseqXP_021899968.11e-153transcription factor TGA6-like
SwissprotQ391401e-118TGA6_ARATH; Transcription factor TGA6
TrEMBLA0A067KWK51e-131A0A067KWK5_JATCU; Uncharacterized protein
TrEMBLV4T8131e-132V4T813_9ROSI; Uncharacterized protein
TrEMBLV4V1M91e-131V4V1M9_9ROSI; Uncharacterized protein
STRINGevm.model.supercontig_847.11e-152(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66728133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.24e-98TGACG motif-binding factor 6