PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_86.65
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 178aa    MW: 20110.6 Da    PI: 7.2173
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_86.65genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.12.1e-241373259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                                  Dg++WrKYGqK++ ++++prsY+rCt++   +C+++k+v++ ++dp +  +tY g+H+++
  evm.model.supercontig_86.65 13 ADGFAWRKYGQKDILKANHPRSYFRCTHKndqKCQATKQVQKIRDDPPLYRTTYYGHHTCK 73
                                 7***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081119.347770IPR003657WRKY domain
SuperFamilySSF1182901.57E-24873IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-26874IPR003657WRKY domain
SMARTSM007741.2E-361274IPR003657WRKY domain
PfamPF031068.9E-251473IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLEPVPQTVT LVADGFAWRK YGQKDILKAN HPRSYFRCTH KNDQKCQATK QVQKIRDDPP  60
LYRTTYYGHH TCKNLVNANH LVNESIQLGF SIINDSTKQD HTPFSISFPS SSSLKNECKQ  120
EVLTTNNQLS SSLSKYLLSP DLTTFESCKA STHHSLEMGV MEESVSVGFD DVFPFEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-23873469OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_86.65
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893837.11e-126probable WRKY transcription factor 70
TrEMBLA0A061EIE69e-45A0A061EIE6_THECC; WRKY DNA-binding protein 70, putative isoform 1
STRINGevm.model.supercontig_86.651e-131(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.12e-26WRKY DNA-binding protein 38