PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_89.73
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family ERF
Protein Properties Length: 238aa    MW: 26368.4 Da    PI: 6.9488
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_89.73genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1871121256
                          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                   y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g+
  evm.model.supercontig_89.73  71 AYRGVRMRQ-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKGH 121
                                  69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.76E-3470130No hitNo description
SuperFamilySSF541714.58E-2270129IPR016177DNA-binding domain
PROSITE profilePS5103223.36771128IPR001471AP2/ERF domain
SMARTSM003802.0E-3871134IPR001471AP2/ERF domain
PfamPF008471.3E-1271121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3271129IPR001471AP2/ERF domain
PRINTSPR003679.4E-117283IPR001471AP2/ERF domain
PRINTSPR003679.4E-1194110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MEASFHQKCE ARSIGATSPS SSSSSTMLSS SSINKSCKKF GEEESEINVI NKSKKRVKIN  60
KNEEDGKNYS AYRGVRMRQW GKWVSEIREP RKKSRIWLGT FPTAEMAARA HDVAALAIKG  120
HSAHLNFPEL AHQLPRPSSA NPKDIQAAAA KAAALHCKKS GQDEKNRLVN APSSPASTVA  180
SDDDAFMDLP DLLMDVTRQI DEFWGPSSWQ VDTDDGPIDI GFNYHDDDEL FPWQYCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1766128972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00292DAPTransfer from AT2G35700Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_89.73
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893663.11e-178ethylene-responsive transcription factor ERF039
SwissprotQ9ZQP32e-52ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A061G3Z02e-69A0A061G3Z0_THECC; Integrase-type DNA-binding superfamily protein, putative
STRINGevm.model.supercontig_89.731e-177(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.16e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]