PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.193
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NF-YB
Protein Properties Length: 161aa    MW: 18532.6 Da    PI: 6.6013
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.193genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB165.57.1e-5234129297
                        NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 
                                  +eqdr+lPianv+rimk++lP +akisk+aket+qecvsefisfvt+eas +c+rekrkt+ngdd++wala+lGf++y+e+l
  evm.model.supercontig_9.193  34 KEQDRLLPIANVGRIMKQILPPKAKISKEAKETMQECVSEFISFVTGEASVRCNREKRKTVNGDDVCWALASLGFDNYAEQL 115
                                  89******************************************************************************** PP

                        NF-YB  84 kvylkkyrelegek 97 
                                  + yl++yre+ege+
  evm.model.supercontig_9.193 116 RRYLQRYRETEGER 129
                                  ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.0E-5128137IPR009072Histone-fold
SuperFamilySSF471138.07E-3836136IPR009072Histone-fold
PfamPF008081.7E-2639103IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.4E-186785No hitNo description
PRINTSPR006152.4E-1886104No hitNo description
PRINTSPR006152.4E-18105123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MGDRDSAYKY ILDREGDHHH HHQDHHYQDH EVIKEQDRLL PIANVGRIMK QILPPKAKIS  60
KEAKETMQEC VSEFISFVTG EASVRCNREK RKTVNGDDVC WALASLGFDN YAEQLRRYLQ  120
RYRETEGERS SSSHNQTVGA SDSVNDRRKM INLFGIDGED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4333124192Transcription factor HapC (Eurofung)
4g92_B1e-4333124192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.193
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906789.11e-118nuclear transcription factor Y subunit B-4-like
SwissprotO822482e-55NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLW9QWP64e-61W9QWP6_9ROSA; Nuclear transcription factor Y subunit B-5
STRINGevm.model.supercontig_9.1931e-118(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-57nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]