PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.285

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 247aa MW: 28205 Da PI: 5.886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.285	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.9	1.1e-25	78	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY eYAk++GF++r+++ ++s +n i+ r+fvCs+eg+r+ ++ +++ +r++tr gCka++++ ++ g+w vtk+ evm.model.supercontig_9.285 78 DFYYEYAKRTGFTLRTNRIRHSLKNMAIIGRDFVCSREGFRAAKHMLrKDRVLPPRPVTREGCKAMIRLAARDGGTWIVTKF 159 6****************************************998822333449*********************** PP FAR1 82 eleHnHela 90 + eHnH+l+ evm.model.supercontig_9.285 160 VREHNHKLM 168 *****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-23	78	168	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVLHSVGTLM PETGSGNDYL DGDRISDDEA YDAFVKPEAN AHEPPGINDS GRGLSTGDYE 60 ILEPRTGMTF LSLDDARDFY YEYAKRTGFT LRTNRIRHSL KNMAIIGRDF VCSREGFRAA 120 KHMLRKDRVL PPRPVTREGC KAMIRLAARD GGTWIVTKFV REHNHKLMNN CKFPGELPIV 180 NILSEEEKDK KIQELYDELQ CERERCAAFR QQLHTILKDL EEHADFMSIR VEDIVNSLKE 240 IELDGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.285

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021906952.1	1e-180	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A2H5QLK3	1e-116	A0A2H5QLK3_CITUN; Uncharacterized protein
STRING	evm.model.supercontig_9.285	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16776	8	11
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	6e-43	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.285