PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.288

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 209aa MW: 23619.6 Da PI: 7.0085

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.288	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.6	2.1e-28	45	132	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fY++YA++vGF +r+ +s+ks+r+g+i++r++ C+keg++ ++k+ + + r+++++r gC a+++vk+ek g+w vtk+++ evm.model.supercontig_9.288 45 FYDDYARQVGFFTRIVSSQKSERDGSIISRRLACNKEGFNLSSKTGGKIRIRKQESKREGCMAMIVVKREKPGQWIVTKFVK 126 9*****************************************99899999************************** PP FAR1 84 eHnHel 89 +HnH+l evm.model.supercontig_9.288 127 DHNHPL 132 ***9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-25	45	133	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
METLIEDKFV TSSTRGESGA SCETETTQEP CQGMIFDSEQ AAKAFYDDYA RQVGFFTRIV 60 SSQKSERDGS IISRRLACNK EGFNLSSKTG GKIRIRKQES KREGCMAMIV VKREKPGQWI 120 VTKFVKDHNH PLLVSSTNGG QTSDDKDMKI KELSSELHHA NQFLDTCREQ LRVLMTYIEE 180 HIGCLSRTVE NAVQNIREIE SKNQTEQQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.288

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021906954.1	1e-155	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	2e-21	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	F6HYS1	1e-103	F6HYS1_VITVI; Uncharacterized protein
STRING	evm.model.supercontig_9.288	1e-154	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19294	7	7
Representative plant	OGRP3376	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-54	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.288

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]