PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.289

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 248aa MW: 28511.7 Da PI: 6.6358

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.289	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89	6.6e-28	74	165	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkl 81 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r+e++ k ++k +++r+ tr gC+a+l++ + gkw+++ + evm.model.supercontig_9.289 74 EFYEMYGRQMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRAEKHAKrENKVSSPRPATREGCNAMLRIAAKGGGKWVIYGF 155 6***************************************9998845666779*********************** PP FAR1 82 eleHnHelap 91 ++eHnHel+p evm.model.supercontig_9.289 156 VKEHNHELNP 165 *****975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-25	74	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MASTSGQEFS SNRNYRQWLA ETFDGHETPG DDLSDNLDGN DNVTRPSSQR FSVISESPEP 60 IIGMEFESAE EAREFYEMYG RQMGFTIRNN RTRRSLKDNS IIGREFVCSK EGFRAEKHAK 120 RENKVSSPRP ATREGCNAML RIAAKGGGKW VIYGFVKEHN HELNPSKIPP RRSHRIAFCE 180 DEKDLKIREL STELHRERKK SAAYQEQLQM VLKYIEEHSQ QLSLKVEKMN NIVKELESED 240 QESSCSD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.289

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907017.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
Refseq	XP_021907018.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A2N9HNX5	1e-140	A0A2N9HNX5_FAGSY; Uncharacterized protein
STRING	evm.model.supercontig_9.289	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18086	8	9
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-50	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.289