PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_9.294

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

FAR1

Protein Properties

Length: 258aa MW: 29834.7 Da PI: 6.6345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_9.294	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.8	5.7e-26	77	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtk 80 +fY +Y++++GF+vr++++++s+ n++++ ++fvCskeg+r+++ ++++ + + tr gC+a++++ +++ gkw+vtk evm.model.supercontig_9.294 77 EFYATYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDR-VlpPPPITREGCQAMIRLALRDGGKWVVTK 157 6****************************************99883333.234899******************** PP FAR1 81 leleHnHela 90 + +eH+H+l+ evm.model.supercontig_9.294 158 FIKEHSHKLM 167 ******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.9E-23	77	167	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MDKHLGLGFD SDESDLDVQG ETYEEYGKVE VIPKNLEFSV GEDDEIEKRS PADLPENSEG 60 LEPCIGMVFN SRDEAREFYA TYGRRTGFTV RIHHNRRSRV NNQVIGQDFV CSKEGFRAKK 120 YVYRKDRVLP PPPITREGCQ AMIRLALRDG GKWVVTKFIK EHSHKLMSPN KVPWRGSGKQ 180 LLSEDEKDKR IRELSLKLYN ERQKCKRRCA AYEEQLNLIL KDLEKHTEHI SKKVADVVQS 240 IKAIEEEQSD DSDSEWM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_9.294

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907054.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
Refseq	XP_021907055.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A2C9VZJ4	1e-148	A0A2C9VZJ4_MANES; Uncharacterized protein
STRING	evm.model.supercontig_9.294	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16529	7	11
Representative plant	OGRP8956	5	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-41	FAR1 family protein

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_9.294