PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_9.98
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 151aa    MW: 16288.9 Da    PI: 8.4896
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_9.98genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-055779123
                                EEETTTTEEESSHHHHHHHHHHT CS
                     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                ++C++C++ F ++  L  H++ H
  evm.model.supercontig_9.98 57 FECQYCHREFANSQALGGHQNAH 79
                                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.0E-45583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.15E-65584No hitNo description
PfamPF139122.3E-65681IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.5935784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MSTDHNAVEQ GSINGDGYIN SEKPSGNPVL KLFGFPVTAC EDARVTAQHG GDTIRRFECQ  60
YCHREFANSQ ALGGHQNAHR RERRPRKGHY FYSKHRTACI ATRSGPFDYS SYGLAGLPCQ  120
TPATSNNVNG GDVVDLRLSL APSSTSSPST *
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_9.98
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021906771.11e-109zinc finger protein 7-like
TrEMBLA0A2I4E1363e-21A0A2I4E136_JUGRE; zinc finger protein 8-like
STRINGevm.model.supercontig_9.981e-109(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2063845
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.13e-12C2H2 family protein