PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_90.16
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HSF
Protein Properties Length: 524aa    MW: 57205.7 Da    PI: 5.0448
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_90.16genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.8e-35411322102
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEE CS
                 HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkh 83 
                                  Fl+k+y++++d++++ ++sws+++nsfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++         weF++
  evm.model.supercontig_90.16  41 FLSKTYDMVDDPATDGIVSWSSTNNSFVVWKPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAN 113
                                  9****************************************************************999.........***** PP

                                  SXXXXXXXXXXXXXXXXXX CS
                 HSF_DNA-bind  84 ksFkkgkkellekikrkks 102
                                  + F +g+k+ll++i r+k 
  evm.model.supercontig_90.16 114 EGFLRGQKHLLRSITRRKP 132
                                  ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.8E-3932124IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3536130IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.5E-6237130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-194164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3141130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1992104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDGVTSGNAG NSGGDSSTSG GGGGVAAQPM AMQGANAPPP FLSKTYDMVD DPATDGIVSW  60
SSTNNSFVVW KPPEFARDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ  120
KHLLRSITRR KPAHGHVHQQ PQQTHGQNSS VGACVEVGKF GLEEEVERLK RDKNVLMQEL  180
VRLRQQQQAT DNQLQTMAQR LQGMEQRQQQ MMSFLAKAVQ SPGFLAQFVQ QQNESNRRIT  240
EANKKRRLKQ EGIIENEHAS APDGQIVKYQ PLMNEAAKAM IRQIMKMDSS SRLEPFNSNH  300
DNFLIGNGSS PSSPLESGSS SSHMSGVALQ EVPPTSGQSC YVPTTSGIST PVPSAGISEI  360
QSSPRAATSD KVPTQFPDVS MLVRSQEVPS NSVSPSDVVM SELSPIPEIV PGNMADIPTE  420
TYMESHTESG AFIDPTSLVN GSLSIELDDI APDPDIDALL ENSSFWEELL VQSPVPEDIE  480
STSMGNENKG NETQPIGNGW NKVQHMDKLT EQMGLLKSDT NRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-263213011120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249NKKRRLKQ
2243248KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_90.16
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893607.10.0heat stress transcription factor A-1d
SwissprotQ9LQM70.0HFA1D_ARATH; Heat stress transcription factor A-1d
TrEMBLA0A061G5S90.0A0A061G5S9_THECC; Heat shock transcription factor A1D isoform 1
STRINGevm.model.supercontig_90.160.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64702440
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-147heat shock transcription factor A1D
Publications ? help Back to Top
  1. Higashi Y, et al.
    HsfA1d, a protein identified via FOX hunting using Thellungiella salsuginea cDNAs improves heat tolerance by regulating heat-stress-responsive gene expression.
    Mol Plant, 2013. 6(2): p. 411-22
    [PMID:23393165]
  2. Jung HS, et al.
    Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light.
    Proc. Natl. Acad. Sci. U.S.A., 2013. 110(35): p. 14474-9
    [PMID:23918368]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ohama N, et al.
    The Transcriptional Cascade in the Heat Stress Response of Arabidopsis Is Strictly Regulated at the Level of Transcription Factor Expression.
    Plant Cell, 2016. 28(1): p. 181-201
    [PMID:26715648]