PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.supercontig_919.2

Organism

Carica papaya

Taxonomic ID

3649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica

Family

WRKY

Protein Properties

Length: 144aa MW: 16469.8 Da PI: 9.902

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.supercontig_919.2	genome	ASGPB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.6e-31	57	115	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDg++WrKYG+K+vk+s++pr+YY+C+s+gC+vkk++er+++dp++v++tYeg+Hnhe evm.model.supercontig_919.2 57 MDDGFKWRKYGKKSVKNSPNPRNYYKCSSRGCHVKKRIERERDDPRYVITTYEGTHNHE 115 69********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-33	44	117	IPR003657	WRKY domain
SuperFamily	SSF118290	6.41E-28	49	117	IPR003657	WRKY domain
PROSITE profile	PS50811	32.019	52	117	IPR003657	WRKY domain
SMART	SM00774	5.7E-34	57	116	IPR003657	WRKY domain
Pfam	PF03106	1.6E-24	58	115	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEVIEGASPP TSYNPTPTSS TNKINIRCKS YLEGVKKEKM EVGQRVAFRT KSEMEVMDDG 60 FKWRKYGKKS VKNSPNPRNY YKCSSRGCHV KKRIERERDD PRYVITTYEG THNHESPYVV 120 YCNKMPLMLP TLQIAPLHSS SSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-26	47	117	7	77	Probable WRKY transcription factor 4
2lex_A	2e-26	47	117	7	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269\|PubMed:21030507}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	evm.model.supercontig_919.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021898788.1	1e-103	probable WRKY transcription factor 50
Swissprot	Q93WU9	6e-42	WRK51_ARATH; Probable WRKY transcription factor 51
TrEMBL	A0A1U7YVI0	2e-55	A0A1U7YVI0_NELNU; probable WRKY transcription factor 51
STRING	evm.model.supercontig_919.2	1e-103	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5711	27	47
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64810.1	1e-43	WRKY DNA-binding protein 51

Link Out ? help Back to Top
Phytozome	evm.model.supercontig_919.2

Publications ? help Back to Top
Yan C, et al. Injury Activates Ca2+/Calmodulin-Dependent Phosphorylation of JAV1-JAZ8-WRKY51 Complex for Jasmonate Biosynthesis. Mol. Cell, 2018. 70(1): p. 136-149.e7 [PMID:29625034]