PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.112
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB_related
Protein Properties Length: 174aa    MW: 20170.4 Da    PI: 10.5272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.112genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-094188448
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                                  WT  E  +l+d++ q+G g W+ I + m      Rt+ +++++w+++l
  evm.model.supercontig_92.112 41 WTLAEVMKLIDGISQYGVGKWTDIKKLMFsssVYRTPIDLRDKWRNLL 88
                                  ********************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.1333392IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-123392IPR009057Homeodomain-like
SuperFamilySSF466891.22E-163597IPR009057Homeodomain-like
SMARTSM007173.6E-83790IPR001005SANT/Myb domain
CDDcd116603.78E-183989No hitNo description
PfamPF139212.7E-74193No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MKLFQELESD DVITSSESED CCLTVKRSNK GGDRRKHQRM WTLAEVMKLI DGISQYGVGK  60
WTDIKKLMFS SSVYRTPIDL RDKWRNLLRA SCVHKHNQKH NHIEVEEKVK HAVCPLPKHV  120
IHRIHELAAI HPYPRKRISK FSYTSQVTSP TLPLIPKGYP LSLHGRNVRR KNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.112
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893345.11e-126uncharacterized protein LOC110811233
TrEMBLD7TQN42e-60D7TQN4_VITVI; Uncharacterized protein
STRINGevm.model.supercontig_92.1121e-126(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.19e-27TRF-like 6