PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.70
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family G2-like
Protein Properties Length: 318aa    MW: 33849.7 Da    PI: 6.9773
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.70genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30103156155
                      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                  +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  evm.model.supercontig_92.70 103 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 156
                                  59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-20100160IPR009057Homeodomain-like
PROSITE profilePS5129411.059100159IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-30102161IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-24104156IPR006447Myb domain, plants
PfamPF002491.2E-7106155IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MREEDSNWFS RWEEELPSPE ELMPLSQTLI TPDLAIAFDI RNHNSSSGQQ QQPNPPPPPP  60
PSATPPPSNP LAASQPNSAE FGADSAELGS GAAGDEPART LKRPRLVWTP QLHKRFVDAV  120
AHLGIKNAVP KTIMQLMSVD GLTRENVASH LQKYRLYLKR MQGLSGGGGG AGGNGGGGGG  180
AGLAASSDPA TDHLFASSPV PPHFLHPGRP NSDHFLPSFV PVAALQHHHH HQQMAAAAAA  240
AVAHPHLQPQ YHRQMGHFGS PPNGQFEHSF LARQTQQPIH RMGAPVHNPV PGYVEDLESA  300
NANGGRKVLT LFPTGDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A3e-32103159157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.70
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893418.10.0transcription factor MYBC1-like
SwissprotO222103e-64MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A2P2JJL71e-144A0A2P2JJL7_RHIMU; Uncharacterized protein
STRINGevm.model.supercontig_92.700.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15492791
Representative plantOGRP11571753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.11e-100G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]