PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_92.99
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family MYB
Protein Properties Length: 231aa    MW: 27231.2 Da    PI: 6.0537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_92.99genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171461148
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                 rg+W +eEde+l   v++lG ++W++Iar  g++R++k+c++rw++yl
  evm.model.supercontig_92.99 14 RGPWLEEEDERLTTFVNLLGERRWDSIARASGLKRSGKSCRLRWLNYL 61
                                 89********************************************97 PP
2Myb_DNA-binding574.3e-1870112448
                                  S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
              Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   ++eE+++++++++q+G++ W++Iar+++ gRt++++k++w+++l
  evm.model.supercontig_92.99  70 ISEEEEQIIIQLHQQWGNK-WAKIARRLP-GRTDNEIKNYWRTHL 112
                                  599****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.578961IPR017930Myb domain
SuperFamilySSF466897.11E-2813108IPR009057Homeodomain-like
SMARTSM007171.4E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211568IPR009057Homeodomain-like
CDDcd001672.01E-91661No hitNo description
PROSITE profilePS5129427.5662116IPR017930Myb domain
SMARTSM007174.6E-1766114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2569116IPR009057Homeodomain-like
PfamPF002492.7E-1670112IPR001005SANT/Myb domain
CDDcd001673.34E-781112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MVCRASMKEE KPRRGPWLEE EDERLTTFVN LLGERRWDSI ARASGLKRSG KSCRLRWLNY  60
LRPNLKHGDI SEEEEQIIIQ LHQQWGNKWA KIARRLPGRT DNEIKNYWRT HLRKKLQVEE  120
QVHFQAGRNN GKQEFLYERD DGSISICQSQ DLRPAEDTWE SQNINYPNDG IGNYSFSSSP  180
CETWISDWIS ELSSDQSLVK YHQDYSIYSP GWISEESNIW DYSGPLWNMN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-27141164105C-Myb DNA-Binding Domain
1msf_C3e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_92.99
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893343.11e-170transcription factor MYB27
SwissprotQ9SCP12e-66MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A061ESZ76e-90A0A061ESZ7_THECC; Myb domain protein 27, putative
STRINGevm.model.supercontig_92.991e-170(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.16e-60myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]