PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_929.1
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family CAMTA
Protein Properties Length: 856aa    MW: 97287.2 Da    PI: 7.8868
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_929.1genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1161.51.5e-50301463118
                         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlyc 83 
                                  +e ++rwl+++ei+a+L n++ +++  ++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++
  evm.model.supercontig_929.1  30 EEaRTRWLRPNEIHAVLCNYKYFSVNVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHV 111
                                  5559****************************************************************************** PP

                         CG-1  84 yYahseenptfqrrcywlLeeelekivlvhylevk 118
                                  yYah+++nptf rrcywlL+++le+ivlvhy+e++
  evm.model.supercontig_929.1 112 YYAHGQDNPTFVRRCYWLLDKKLEHIVLVHYRETQ 146
                                  ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.48225151IPR005559CG-1 DNA-binding domain
SMARTSM010761.2E-7428146IPR005559CG-1 DNA-binding domain
PfamPF038592.8E-4531144IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:1.25.40.201.8E-17488600IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.49E-18489601IPR020683Ankyrin repeat-containing domain
PfamPF127962.7E-7489567IPR020683Ankyrin repeat-containing domain
CDDcd002042.42E-15489597No hitNo description
PROSITE profilePS5029716.786505609IPR020683Ankyrin repeat-containing domain
SMARTSM002486.0E-6538567IPR002110Ankyrin repeat
PROSITE profilePS5008811.968538570IPR002110Ankyrin repeat
SuperFamilySSF525402.66E-6677752IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.291686712IPR000048IQ motif, EF-hand binding site
SMARTSM0001513701723IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309702731IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0024724746IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.274725749IPR000048IQ motif, EF-hand binding site
PfamPF006127.6E-4726746IPR000048IQ motif, EF-hand binding site
SMARTSM0001514803825IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.766805833IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 856 aa     Download sequence    Send to blast
MDGAVSGRLV GSEIHGFRTL DDLDVVTMWE EARTRWLRPN EIHAVLCNYK YFSVNVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGNEERIH VYYAHGQDNP  120
TFVRRCYWLL DKKLEHIVLV HYRETQEVSP ATSGNSNSSS TSDPSTPWFL TEETNCGVDN  180
AYYAQEKESL AESGDRLTLK NHELRLHEIN TLEWDELLAK NDVNSVLPKA GFVQQGQIAV  240
NGPTSDERQL PAYNLSPEKS SFSNSLVPTV QSDILHFDPP VITSASMDVL VNDGLQSQDS  300
FGRWMDYIID DSPGSMSDPT LESPISSVHD SVPSPVISDL LSSVPEQVFT IKDVSPAWAY  360
SNEKTKVFHE LFLSYLNAAS SSELMLLLII MSGCRAGLMT EELFKWEKFQ LQTRLSYLLF  420
STNKSLDILS SKVSPSSLKE ARKFAQKTSH LSNSWAYLMK SIQDNQTSFP EAKDMLFELT  480
LKNRLKEWLI ERILEGCKAT EYDAHGQGVI HLCSILGYTW AIHLFSWSGI SLNFRDKHGW  540
TALHWAAFYG REKMVAVLLS AGAKPNLVTD PTSKNPGGST AADLASKNGY DGLAAFLSEK  600
ALVAQFKDMS LAGNVSGSLQ SSTTDKTNTE NLTEEELYLK DTLAAYRTVA EAASRIQVAF  660
REHSLKVRTK AVEASSPEDD ARNIIAAMKI QHAFRNYETR KRLAAAARIQ HRFRTWKMRR  720
EFLTMRRQAI KIQAAFRGFQ VRRQYRKILW SVGVVEKAIL RWRLKRRGFR GLSVDKCEDV  780
ADQGQESDVE DFYKTSQKQA EERVERSVVS VQAMFRSKKA QEEYRRMKLA HDQAKLEYEC  840
LEDYDTDLLK PQEFR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00435DAPTransfer from AT4G16150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_929.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2081393e-36AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021898630.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLA0A1R3GK400.0A0A1R3GK40_9ROSI; IQ motif, EF-hand binding site
STRINGevm.model.supercontig_929.10.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40212758
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]