PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_94.23
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 180aa    MW: 21161.1 Da    PI: 7.5775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_94.23genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1028.2e-32211521128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleev..ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                  lppGfrF Ptdeelv++yL +kv + + ++ +    i+ +d+y+  P++L+ ++++++ke++fF+++++k+ +gk+++r++ 
  evm.model.supercontig_94.23  21 LPPGFRFLPTDEELVTHYLMNKVFNYRpIPSFILfeIDACDLYSKPPKNLE-QFSSGQKEIFFFIHEERKNVEGKNNKRMVG 101
                                  79********************988877555443359*************8.788899*********************876 PP

                          NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                    +g+W+ +g   ++++++g +   k  L+++++++++++kt+W m+ey+l
  evm.model.supercontig_94.23 102 dgTGFWQLSGDRIPICNSHGYVFAFKIHLIYFSANKSTPKKTHWRMDEYHL 152
                                  45789********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-3316170IPR003441NAC domain
PROSITE profilePS5100533.29821172IPR003441NAC domain
PfamPF023651.5E-1622152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MERCQKEEEK YGSEEKMFIS LPPGFRFLPT DEELVTHYLM NKVFNYRPIP SFILFEIDAC  60
DLYSKPPKNL EQFSSGQKEI FFFIHEERKN VEGKNNKRMV GDGTGFWQLS GDRIPICNSH  120
GYVFAFKIHL IYFSANKSTP KKTHWRMDEY HLCLDQETSK GEKWVVGRVK RGTDYESHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-181915213140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_94.23
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016651384.11e-49PREDICTED: NAC transcription factor 29-like
TrEMBLA0A251PB645e-48A0A251PB64_PRUPE; Uncharacterized protein
STRINGevm.model.supercontig_94.231e-133(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2188055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.14e-23NAC domain containing protein 46