PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_94.52
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family C2H2
Protein Properties Length: 214aa    MW: 24297.4 Da    PI: 9.8994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_94.52genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00084185203321
                                  ETTTTEEESSHHHHHHHHH CS
                      zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                                  C  Cg+ F ++  L++H+ 
  evm.model.supercontig_94.52 185 CDRCGEEFESRNKLHKHLA 203
                                  *****************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.369183212IPR007087Zinc finger, C2H2
PROSITE patternPS000280185207IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSGHKSRKK DMDSKYEDEI VQTQDGIENV NDELDFMEYN NRKSTRKNRG SKKERVKRNS  60
GVATKSDVDG TKEQNKETEG NEDRKERGQN NREAAVNHDV NERKCQKQET EGNGNSHFTE  120
SSFHSPMDNE SFDKRTDNHS GRNHKATEQS LGRKEARKKD MDAKSKGSSK GKKVKGSSKN  180
SSNMCDRCGE EFESRNKLHK HLADSGHASL KFR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_94.52
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893264.11e-148LOW QUALITY PROTEIN: DNAJ protein JJJ1 homolog
STRINGevm.model.supercontig_94.521e-152(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1637222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.16e-12DNAJ heat shock N-terminal domain-containing protein