PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_95.11
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family HB-PHD
Protein Properties Length: 889aa    MW: 102017 Da    PI: 8.41
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_95.11genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox352.4e-11514559853
                                  -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                     Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                   ++ +e L ++F++n  ps++ +e L+k+lgL+ ++V+ WF+N R+
  evm.model.supercontig_95.11 514 PPNAVEKLRQAFAENELPSRTIKENLSKELGLEPDKVSKWFKNARY 559
                                  47899***************************************96 PP
2PHD34.44.9e-12243297150
                                  SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
                          PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCke 50 
                                  +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C +
  evm.model.supercontig_95.11 243 FCAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTENIPPGdqGWFCKFCVC 297
                                  699999854455********56********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.98E-14234300IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.6E-11239298IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.077241298IPR019787Zinc finger, PHD-finger
CDDcd155044.43E-32243295No hitNo description
SMARTSM002496.3E-8243296IPR001965Zinc finger, PHD-type
PfamPF006281.9E-9243297IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590244295IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF466891.84E-10500559IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-13501558IPR009057Homeodomain-like
PROSITE profilePS5007112.681504564IPR001356Homeobox domain
CDDcd000866.24E-9505559No hitNo description
SMARTSM003891.7E-10506568IPR001356Homeobox domain
PfamPF000466.9E-9514559IPR001356Homeobox domain
PfamPF037325.3E-5682744IPR005162Retrotransposon gag domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 889 aa     Download sequence    Send to blast
MSKDDNVKVE LNQVLVKMMY PTWCLSRISM RGPGKKASRQ EFGKSGLSER ETESELISSL  60
QFKKRSNMSC SRKPKAKVKS HAKRNSTNLS KTKRKATGAM SSKKRASMKL QDKIASVVSP  120
EGDGKHISED VKVKKLRKRR KKKQKNKVEL DEASRLQRRT RYLLIKMKLE QNLIDAYSTE  180
GWKGHSREKI RPEKELERAR KQILKCKLGI RDAIHQLDSL SSVGSIEDTA IAPDGSVYHE  240
HIFCAKCKLR EAFPDNDIVL CDGTCNCAFH QKCLDPPLDT ENIPPGDQGW FCKFCVCKIE  300
IIEAMNAHIG THFPVDSNWQ DIFKEEAALP DDGGALLNQE EEWPSDDSED DDYDPERREK  360
SCSASEVGTD EDASDNASSS TSLSWSLDGE AFSGSGTWEL EGDHYRSQLV DSSTNSAETS  420
DAEIIHSRRQ RRAVDYKKLY DEMFGKEALP YEQISEDEDW GPHKRRRREK ESDAVSTLMT  480
LHESEKKSPN IETVEVGEKL SPDDKARRTI FRIPPNAVEK LRQAFAENEL PSRTIKENLS  540
KELGLEPDKV SKWFKNARYI ALRTRKAEGA KQHNSSPQFL EESGLQLCNT ENPDDVVMEN  600
NSAEGENSIK IHKGVNQNRR GSLRKSNKVE MSATTISFFL HSITILFGCQ NFLFYETAHE  660
VWEAVREFYS SQDNMLIIFE IESALHELRQ SEMSVTQYYN SLIRNWQQLD VFEEHKWSCS  720
EDVKKFKTIV EQKRIFKFLM GLNENLDDVR GRVLDTKPLL SIREVFSKVR REESRKKVMM  780
EETQLAQLSE NASALTTRIN LEFNDDMSLK KLLKAKRKEN KKVGIAAGHR WQAFEVEMER  840
LYRAKVRLDN MKHTLLKLKN QKARNLNKSQ LLEESVIYVP VAELKEKA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141KKLRKRRKK
2133142KKLRKRRKKK
3136142RKRRKKK
4464469RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_95.11
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021893119.10.0pathogenesis-related homeodomain protein-like
TrEMBLA0A1Q3CVJ00.0A0A1Q3CVJ0_CEPFO; Homeobox domain-containing protein/PHD domain-containing protein
STRINGevm.model.supercontig_95.110.0(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-169pathogenesis related homeodomain protein A