PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_99.63
Organism
Carica papaya
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family NAC
Protein Properties Length: 210aa    MW: 24016.2 Da    PI: 9.9375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_99.63genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM161.92.4e-50141381128
                          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 
                                  lppGfrFhPtd+el+ +yLk+kv + +l++ ++i+e+d++k++PwdLp      e+e yfFs+r+ ky++gkr+nrat sgy
  evm.model.supercontig_99.63  14 LPPGFRFHPTDQELLLDYLKRKVFSCPLPA-SIIPELDVCKADPWDLPGD---WEEERYFFSRREAKYPNGKRSNRATGSGY 91 
                                  79****************************.89***************44...46799************************ PP

                          NAM  83 Wkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  Wkatg dk+++s+ ++++vglkktLvfy+g+ p+g++tdW+mheyrl
  evm.model.supercontig_99.63  92 WKATGIDKQIVSAsGKHVVGLKKTLVFYRGKPPHGSRTDWIMHEYRL 138
                                  ***********9967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-6010159IPR003441NAC domain
PROSITE profilePS5100557.65814159IPR003441NAC domain
PfamPF023653.1E-2615138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEKLNFVKNG VVRLPPGFRF HPTDQELLLD YLKRKVFSCP LPASIIPELD VCKADPWDLP  60
GDWEEERYFF SRREAKYPNG KRSNRATGSG YWKATGIDKQ IVSASGKHVV GLKKTLVFYR  120
GKPPHGSRTD WIMHEYRLHS SVSNQMRKEK WVVCRIFLKK RGTKNQNPVF YDFLRSDSSS  180
SSGSSGITQV SCNESDDHEE SSKSNFNSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-481216015166NO APICAL MERISTEM PROTEIN
1ut4_B3e-481216015166NO APICAL MERISTEM PROTEIN
1ut7_A3e-481216015166NO APICAL MERISTEM PROTEIN
1ut7_B3e-481216015166NO APICAL MERISTEM PROTEIN
3swm_A3e-481216018169NAC domain-containing protein 19
3swm_B3e-481216018169NAC domain-containing protein 19
3swm_C3e-481216018169NAC domain-containing protein 19
3swm_D3e-481216018169NAC domain-containing protein 19
3swp_A3e-481216018169NAC domain-containing protein 19
3swp_B3e-481216018169NAC domain-containing protein 19
3swp_C3e-481216018169NAC domain-containing protein 19
3swp_D3e-481216018169NAC domain-containing protein 19
4dul_A3e-481216015166NAC domain-containing protein 19
4dul_B3e-481216015166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapevm.model.supercontig_99.63
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021892824.11e-156NAC domain-containing protein 83
SwissprotQ9FY931e-89NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A218L0U91e-154A0A218L0U9_CARPA; NAC4 protein
STRINGevm.model.supercontig_99.631e-155(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-91NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]