PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.233
Common NameAMTR_s00001p00223800
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family SRS
Protein Properties Length: 216aa    MW: 22616.2 Da    PI: 8.9625
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.233genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702113.92.2e-352095478
                                    DUF702  4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaask 73
                                              g+ +CqdCGnqakkdC+h+RCRtCCksrgf+C th+kstWvpa++rrerqqqlaa++++++++   ++++k
  evm_27.model.AmTr_v1.0_scaffold00001.233 20 GGNTCQDCGNQAKKDCVHQRCRTCCKSRGFECPTHIKSTWVPASRRRERQQQLAALHHHQQQQLvLHDKPK 90
                                              5679****************************************************999988875666667 PP

                                    DUF702 74 rkrel 78
                                              r r+ 
  evm_27.model.AmTr_v1.0_scaffold00001.233 91 RVRQA 95
                                              76654 PP
2DUF70271.32.9e-229115299153
                                    DUF702  99 eletss.....lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153
                                                + ++s     lP+ev++ avfrcvrvssv++  +eee+aYqtav igG vfkG+Lyd+G++
  evm_27.model.AmTr_v1.0_scaffold00001.233  91 RVRQASnlgpgLPSEVRTGAVFRCVRVSSVEEggDEEEYAYQTAVAIGGRVFKGVLYDRGPD 152
                                               33333346777*********************745667**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.9E-5421152IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.8E-282365IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-22102151IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLGSGQGSEG RPSSGLVLGG GNTCQDCGNQ AKKDCVHQRC RTCCKSRGFE CPTHIKSTWV  60
PASRRRERQQ QLAALHHHQQ QQLVLHDKPK RVRQASNLGP GLPSEVRTGA VFRCVRVSSV  120
EEGGDEEEYA YQTAVAIGGR VFKGVLYDRG PDPAASGSGG GGGGASSSSL GEGGGGGVSS  180
SMLAASLLDP TAMFSHNPYL SAEFSFVPRR NSSRL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1024442e-34AK102444.1 Oryza sativa Japonica Group cDNA clone:J033093N15, full insert sequence.
GenBankAP0036832e-34AP003683.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0431G06.
GenBankAP0043682e-34AP004368.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1139B11.
GenBankAP0149572e-34AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126092e-34CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629082.11e-145protein SHI RELATED SEQUENCE 1
SwissprotQ9LQZ57e-53SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLW1NLI71e-155W1NLI7_AMBTC; Uncharacterized protein
STRINGERM963561e-155(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.17e-37SHI-related sequence 5
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]