PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.384
Common NameAMTR_s00001p00262320
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 499aa    MW: 55876.5 Da    PI: 7.009
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.384genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.8e-092723091954
                                               HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                  Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                               Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  evm_27.model.AmTr_v1.0_scaffold00001.384 272 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 309
                                               554458******************************88 PP
2BELL82.74.8e-271452001772
                                      BELL  17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                                                +VdkrYkqy+e ++ v+ssFeavag g+a++Y  +A++a+SrhFrcL+d i+ q+
  evm_27.model.AmTr_v1.0_scaffold00001.384 145 RKVDKRYKQYCERMRSVASSFEAVAGAGAAHVYLGMASRAMSRHFRCLRDGIVAQL 200
                                               47***************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-3479198IPR006563POX domain
PfamPF075261.2E-2985196IPR006563POX domain
PROSITE profilePS5007112.05250313IPR001356Homeobox domain
SMARTSM003891.5E-8253317IPR001356Homeobox domain
CDDcd000866.75E-11253314No hitNo description
SuperFamilySSF466896.42E-17254319IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-27256319IPR009057Homeodomain-like
PfamPF059206.2E-18270309IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MINHDIFNLE LLGFQSKNNP SRVTGVSMDG LSTDMLQQLD HPQSNQSPIG ENQFILQNRF  60
LDSQSNASNI WPTLSLSSEK PMLEIKNSRY LVPAQKLLYE FCNLGSKRDK SMRSINGRSH  120
GVSTSANMEP APSVYSSDLF ELQKRKVDKR YKQYCERMRS VASSFEAVAG AGAAHVYLGM  180
ASRAMSRHFR CLRDGIVAQL RATRVALGEK EAAVMVSLNG ATRGETPSLK LVDQRLRRQR  240
ALQQMGMMEA HPWRPQRGLP ERSVSLLRAW LFEHFLHPYP SDVDKHILAR QTGLSRSQVS  300
NWFINARVRL WKPMVEEMYL EEAKEDIEDR QNPNPNSNSP FMPSEPNATA QDRDSESLSS  360
IVISDTKDQV ARNLPELGFP YAEDDNSSQR HFSGMFPSED SGQRQFSGNY TEESSVQLQF  420
SGNYSDENST HRQISMSGEG VSLTLGLQQG GAMNFGFSSN PQNPLLFLEG EDHGTGFGSQ  480
MGGYRNLVGG HLMRDYVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15259317563Homeobox protein Meis2
3k2a_B2e-15259317563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011629004.10.0homeobox protein BEL1 homolog isoform X2
TrEMBLW1NKY80.0W1NKY8_AMBTC; Uncharacterized protein
STRINGERM965070.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.12e-89TALE family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]