PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.399
Common NameAMTR_s00001p00264520, LOC18424456
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TALE
Protein Properties Length: 280aa    MW: 32110.4 Da    PI: 7.1205
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.399genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.81.5e-072282612154
                                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                               k +yp+++++++L +++gL+ +q+ +WF N+R +
  evm_27.model.AmTr_v1.0_scaffold00001.399 228 KWPYPTEDDKTRLVDETGLQLKQINNWFINQRKR 261
                                               469*****************************87 PP
2ELK26.41.5e-09182203122
                                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                               ELK +L++++++++ ++++E++
  evm_27.model.AmTr_v1.0_scaffold00001.399 182 ELKIELKQGFRSRIEDVREEIL 203
                                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.8E-191357IPR005540KNOX1
PfamPF037903.2E-171556IPR005540KNOX1
SMARTSM012563.9E-2272127IPR005541KNOX2
PfamPF037911.1E-1875126IPR005541KNOX2
PROSITE profilePS512139.184182202IPR005539ELK domain
PROSITE profilePS5007111.661202265IPR001356Homeobox domain
SMARTSM003891.1E-10204269IPR001356Homeobox domain
SuperFamilySSF466896.84E-16204268IPR009057Homeodomain-like
CDDcd000868.83E-11205266No hitNo description
Gene3DG3DSA:1.10.10.607.0E-25209267IPR009057Homeodomain-like
PfamPF059208.0E-18222261IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MVGEGVAEEE ERERVKAEIA GHPLYEQLLA AHVGCLRVAT PIDQLPLIDA QLARSHNLLR  60
AYSAIRLRNP NPILHPHDRQ HLDQFLAQYV LVLSSFKEQL QQHVRIHAVE AVTACREIEQ  120
SLHALTGATL GEGTGATMSD DEDDLQMDFA MDAGAEAQDM MRFGPLLPTE SERSLMERVR  180
QELKIELKQG FRSRIEDVRE EILRKRRAGK LPGDTTSVLK QWWQQHSKWP YPTEDDKTRL  240
VDETGLQLKQ INNWFINQRK RNWHSNSQSV TCLKSKRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1258278RKRNWHSNSQSVTCLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829106.10.0homeobox protein HD1 isoform X2
SwissprotP466061e-152HD1_BRANA; Homeobox protein HD1
TrEMBLW1NL030.0W1NL03_AMBTC; Uncharacterized protein
STRINGERM965220.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-138KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  2. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]