PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.432
Common NameAMTR_s00001p00269160, LOC18424490
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 163aa    MW: 18257.8 Da    PI: 6.1374
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.432genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12.1e-101161153
                                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                                       HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                                              +++ h+ +ErrRR+++   + +Lr+++P+++    +K s  + L++A++Y+ +
  evm_27.model.AmTr_v1.0_scaffold00001.432 11 KKELHKDVERRRREEMTALLGTLRSHIPEDF--LEGKSSMCDQLKEATNYVTH 61
                                              6788*************************76..9****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-13881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-7967No hitNo description
PROSITE profilePS5088812.0431062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-71161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-111179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-41668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MELGSNEGRS KKELHKDVER RRREEMTALL GTLRSHIPED FLEGKSSMCD QLKEATNYVT  60
HQREKIQELR EKRDRLRSAP EVVVRPCGDG SAIEVVIGGA NESGICVADV VAILEESGLE  120
VKSCSSSCSR QSSIRCLRCE VCEGKEIDTI DIQEKLRHLF LR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829139.11e-112transcription factor bHLH55
TrEMBLW1NMQ11e-111W1NMQ1_AMBTC; Uncharacterized protein
STRINGERM965551e-112(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1638838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.11e-19bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]