PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.466
Common NameAMTR_s00002p00262770
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family M-type_MADS
Protein Properties Length: 74aa    MW: 8329.65 Da    PI: 10.8468
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.466genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.54.8e-30959151
                                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                              krie+ +nrqvtfskRr+g+lKKA+ELS+LCda+  +i+fss+gk+yeys+
  evm_27.model.AmTr_v1.0_scaffold00002.466  9 KRIEDRTNRQVTFSKRRTGLLKKAHELSILCDAQLGLIVFSSSGKMYEYSN 59
                                              79***********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
CDDcd002651.01E-38265No hitNo description
SuperFamilySSF554553.01E-30267IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-31323IPR002100Transcription factor, MADS-box
PfamPF003196.4E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-313859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MGRGKIEIKR IEDRTNRQVT FSKRRTGLLK KAHELSILCD AQLGLIVFSS SGKMYEYSNP  60
PSRSVFLPFT STH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A9e-24271170Myocyte-specific enhancer factor 2A
3mu6_B9e-24271170Myocyte-specific enhancer factor 2A
3mu6_C9e-24271170Myocyte-specific enhancer factor 2A
3mu6_D9e-24271170Myocyte-specific enhancer factor 2A
6byy_A1e-23170170MEF2 CHIMERA
6byy_B1e-23170170MEF2 CHIMERA
6byy_C1e-23170170MEF2 CHIMERA
6byy_D1e-23170170MEF2 CHIMERA
6bz1_A1e-23170170MEF2 CHIMERA
6bz1_B1e-23170170MEF2 CHIMERA
6bz1_C1e-23170170MEF2 CHIMERA
6bz1_D1e-23170170MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520175.11e-37MADS-box protein GGM13
RefseqXP_020520176.11e-37MADS-box protein GGM13
SwissprotQ84NC22e-30MAD31_ORYSJ; MADS-box transcription factor 31
SwissprotQ9XGJ43e-30GGM13_GNEGN; MADS-box protein GGM13
TrEMBLW1P3588e-47W1P358_AMBTC; Uncharacterized protein
STRINGERN013901e-47(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.24e-31MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]