PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.492
Common NameAMTR_s00002p00265060
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 217aa    MW: 24730.3 Da    PI: 8.9382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.492genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-0863109455
                                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                h + Er+RR+++++++  L ++lP++      K++ a+i+++A+  +++Lq
  evm_27.model.AmTr_v1.0_scaffold00002.492  63 RHMMKERQRREKMKQSYLLLHSMLPPR-----SKNDQASIVQQATIELQNLQ 109
                                               58899*********************8.....6***********98888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.8959108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1160126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.85E-663111No hitNo description
Gene3DG3DSA:4.10.280.101.4E-663126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-663109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002365114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MCDDACYQLH LNGAFAPYTG IFLARKTGLS GTRNLNKRMI ELLRAIWASN NSGAGSLESQ  60
SHRHMMKERQ RREKMKQSYL LLHSMLPPRS KNDQASIVQQ ATIELQNLQN LKNELQRRNH  120
DLNERLIGKR PITEEEKNNE FVNIKLKVGN PSCGIDSMIA ALQSLKSMGL STRAIRSQFS  180
ELEFEATIEV ENKLEVREVE KAVETALMEA EKCRWD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838847.21e-160transcription factor bHLH92
TrEMBLW1P1G71e-159W1P1G7_AMBTC; Uncharacterized protein
STRINGERN014161e-159(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.13e-33bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]