PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.534
Common NameAMTR_s00002p00268140
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 648aa    MW: 72106.5 Da    PI: 6.794
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.534genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.36e-17212268359
                                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                                               ++kr rr+++NRe+ArrsR+RK+a + eLe+ v++L  eN++L k+l+ +++++ + 
  evm_27.model.AmTr_v1.0_scaffold00002.534 212 DVKRVRRMISNRESARRSRRRKQAHLSELETQVAQLRVENSSLLKRLSDISQKYNEA 268
                                               689*********************************************999998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.7E-14206266No hitNo description
SMARTSM003387.0E-21210274IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.679212267IPR004827Basic-leucine zipper domain
PfamPF001701.9E-14213266IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.21E-11214264No hitNo description
CDDcd147021.75E-6215266No hitNo description
PROSITE patternPS000360217232IPR004827Basic-leucine zipper domain
PfamPF124984.0E-39281396IPR020983Basic leucine-zipper, C-terminal
PfamPF130411.1E-10481530IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.041482516IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-4485517IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.429552582IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.9E-4557579IPR002885Pentatricopeptide repeat
PfamPF015355.4E-4557580IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.189583617IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007568.2E-8585616IPR002885Pentatricopeptide repeat
PfamPF015353.0E-8585615IPR002885Pentatricopeptide repeat
PfamPF015350.0071616640IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MDNKVFSVED IAETYWNPHS PPLTNEEEAE KIRVSNMNRS ASEWAFQRFL EEASATSSSH  60
NNKRQEDEVV EIENPPPLLN EAQSNENPIP MGSQDHQAIL KQRLDLLCAA VALTRSSAIK  120
SQDCPLLAES GVQGSDAPQL GFLSSGKGHV YNFPRTQDQS VAGPIGIPAL PAVTKNVGAQ  180
VRATTSGSSR EQSDDDDVEV DTELNEPVDP SDVKRVRRMI SNRESARRSR RRKQAHLSEL  240
ETQVAQLRVE NSSLLKRLSD ISQKYNEAAV DNRILKADVE TLRAKVKMAE DSVKRVTGGG  300
AFALTMSDIS GISAQFSPSD ASSVGAAVPV QDDVKHFFQP TDIHDHQRLS NGLMDMGLNG  360
GEEAHSAMVG KMGRTPSLQR VASLEHLQKR IRGGPSSACG PIPWDASWDA EPSNKAEGNN  420
KFPQFPVFKT LKQCTQVHAY MIITGLILNP QNPKKLLLFL TDPDHGNLHY ARLVFRRISN  480
PSLFLWNTFI KGCYKNHAAR EAIDLYREMR RSNMSLDMHT FQFLFKACAR AVAEREGMEI  540
HGNFIKLISV TDVFVDNSLI HMYCSFGRVE LARKVFELMG FKNVVSWTCI LNGYAKLGLM  600
DDALRVFDEM PDKNVVSWAS MVAGYAQCGR GQEAVRWLNE TYYHIIL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D6e-2442462915332PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226233RRSRRRKQ
2228233SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621614.10.0light-inducible protein CPRF2 isoform X1
SwissprotQ990902e-93CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLW1P0J40.0W1P0J4_AMBTC; Uncharacterized protein
STRINGERN014580.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.25e-58bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]