PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00002.8
Common NameAMTR_s00002p00019320, LOC18429008
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 254aa    MW: 28367.3 Da    PI: 8.7551
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00002.8genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1383129354
                                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                                     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                             ++h+ +ErrRR+riN+ +++Lr llP+      +K +Ka+ L ++v+++k+L
  evm_27.model.AmTr_v1.0_scaffold00002.8  83 KSHSDAERRRRERINTHLNTLRNLLPNT-----TKTDKASLLAEVVRHVKEL 129
                                             79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.64180129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-1183129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-1484135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1484134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-1285131No hitNo description
SMARTSM003534.2E-1386135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.68E-9158228No hitNo description
Gene3DG3DSA:3.30.70.2601.6E-10160225No hitNo description
PROSITE profilePS5167110.187162242IPR002912ACT domain
CDDcd048993.24E-15165224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MIPFVPPGFT LRDGYCYMNN TTTTTTTTTQ CWDQGRYLQK LACKSSSSPC SVLTLLNDDN  60
NNNSEKVNIC WREKEAKAAA ASKSHSDAER RRRERINTHL NTLRNLLPNT TKTDKASLLA  120
EVVRHVKELK QHAKGTEGHG PIPGEADELT VVHPEPSSSL IMATLCCEDR PGLLSELTNA  180
FKALRLRTVR AEITTLGGRV KNVFFIDREH SETSLSCLED TLKAIMVKPG PPPIVRHESK  240
RPRINYHNND FMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006838363.10.0transcription factor bHLH30
RefseqXP_020519842.10.0transcription factor bHLH30
SwissprotQ9S7Y19e-42BH030_ARATH; Transcription factor bHLH30
TrEMBLW1NTP50.0W1NTP5_AMBTC; Uncharacterized protein
STRINGERN009320.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37715106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]