PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00004.182

Common Name

AMTR_s00004p00165390

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

YABBY

Protein Properties

Length: 211aa MW: 23695.7 Da PI: 7.8689

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00004.182	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	215.5	1.6e-66	2	156	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee 70 ++ ++se+vCyvqCn CntilavsvP ++lf++vtvrCGhCt+lls+n+ q+++ ++ + evm_27.model.AmTr_v1.0_scaffold00004.182 2 SLENASEHVCYVQCNLCNTILAVSVPGSCLFTIVTVRCGHCTNLLSMNMGALLQTIPFHDL-Q------ 63 67899************************************************999984.3...... PP YABBY 71 lleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqr 139 ++ v+ ++ + ++ ++s+s + s ++ +++e pr+ p +rPPekrqrvPsaynrfikeeiqr evm_27.model.AmTr_v1.0_scaffold00004.182 64 ---NQSVAPQERQRMEDGSSSKSIKDSE-TI--PSENEEPRTIP-NRPPEKRQRVPSAYNRFIKEEIQR 125 ...3333333332222222222222222.22..22344566666.9******************* PP YABBY 140 ikasnPdishreafsaaaknWahfPkihfgl 170 ika nP+i+hreafs+aaknWahfP++h+gl evm_27.model.AmTr_v1.0_scaffold00004.182 126 IKARNPEITHREAFSTAAKNWAHFPHLHYGL 156 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.6E-72	6	156	IPR006780	YABBY protein
SuperFamily	SSF47095	7.72E-8	97	149	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	9.2E-5	104	150	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MSLENASEHV CYVQCNLCNT ILAVSVPGSC LFTIVTVRCG HCTNLLSMNM GALLQTIPFH 60 DLQNQSVAPQ ERQRMEDGSS SKSIKDSETI PSENEEPRTI PNRPPEKRQR VPSAYNRFIK 120 EEIQRIKARN PEITHREAFS TAAKNWAHFP HLHYGLSLER NNQVTLDEVL VNEGSQSDPI 180 IHQAVLGLGP LQPYPRQARG RPYKDQGQRS *

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB126654	0.0	AB126654.1 Amborella trichopoda AmbF1 mRNA for YABBY2 like protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292760.1	1e-134	axial regulator YABBY 5
Swissprot	Q9XFB0	6e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	W1NE60	1e-156	W1NE60_AMBTC; Uncharacterized protein
STRING	ERM93666	1e-156	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-66	YABBY family protein

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00004.182

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]