PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.150
Common NameAMTR_s00006p00250310
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 540aa    MW: 59274.3 Da    PI: 7.3049
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.150genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17237286255
                                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                               r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  evm_27.model.AmTr_v1.0_scaffold00006.150 237 RSKHSATEQRRRSKINDRFQILRDLVPHS----DQKRDKASFLLEVIEYIQLLQ 286
                                               889*************************9....9*****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.4E-23233306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-19234301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.78235285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-15237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-15237290No hitNo description
SMARTSM003531.3E-12241291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MPGFSSYLKT QDFLQPLEKV GKSNTKGDAP LEASLGKVSS VEHVLPGGIG TYSISHISTF  60
TQSSSGKVEK PVGVVVPLNN PETKSDRNND NTSNNSSYGG GAFTLWEESA VADSRMVDRT  120
GERHPTREYV EKSGYWSTER PVVGVADLPF LTKSGYGRAM VDTTQLSSSS TKQRPQNSQG  180
FVEIVKSVKG TSEDDDDDEE EHMDRNRDNR KESSSHKGDL LVKVDAKHID QRANTPRSKH  240
SATEQRRRSK INDRFQILRD LVPHSDQKRD KASFLLEVIE YIQLLQEKVQ KYESSYQGWN  300
QDKMKIMAWK GQGQGENAAE HSQPKMNSSF SNTAPSIIAP NSHSSPQPET HNTASPGYAT  360
PYKEKERMGV TPCKPVAVPL SLQQHMYSQY GRATMQTQQR LISDAERAAT PPQPQPQPQP  420
QQKTGPSDRK IDGPHSSGNE QEELGIEGGI ISVSSVYSQG LLGTLTQALQ SSGLDLSQAS  480
ISVQIDLGKR GSRPSTTTSS AKDHEEPSTS NLITEHSRPT SSGGDSEHPQ KRPKKERDC*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522638.10.0transcription factor BIM2 isoform X2
TrEMBLW1P7A60.0W1P7A6_AMBTC; Uncharacterized protein
STRINGERN057520.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.63e-56bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]