PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.175
Common NameAMTR_s00006p00254090, LOC18433963
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family BBR-BPC
Protein Properties Length: 357aa    MW: 39264.4 Da    PI: 10.2917
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.175genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind234.48.6e-725935620301
                                 GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88 
                                               lke  + ++ ++ aerda++rer++a++ekkaa+ erd af+qrd+ala+r++a++erd +l+al+  +
  evm_27.model.AmTr_v1.0_scaffold00006.175  59 LKEFASSRMTTVKAERDAAVRERDMAIAEKKAATSERDSAFNQRDMALAQREEAVMERDAALAALESLK 127
                                               55444555555556**************************************************99988 PP

                                 GAGA_bind  89 nsla............salpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaa 141
                                               +               +++ +  +++++++  + ++   +    ++ +d +++l+  ++  + p+  ++
  evm_27.model.AmTr_v1.0_scaffold00006.175 128 RDHPdwhayvaqlahiFSSTQLGSCVREARVDQPIE---NyaynSNRADGQMGLSGPSQPVVAPTDGSN 193
                                               776556555544432222222222222222222222...233445566666665555555556666655 PP

                                 GAGA_bind 142 eeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad..erskaekksidlvlngvslDes.t 207
                                               +++  +k+ +kr+ ++   +k  +++  +++++k+k ++e++    +++ +   ++    g sl +s +
  evm_27.model.AmTr_v1.0_scaffold00006.175 194 PDMGPTKNGEKRKGGAWDGKKPGRRNSATNPAKKRKPAAEKKVgiAQQNPKPTGQKRRERGSSLHKSlS 262
                                               555555555544443333222222222222222222222222211112222222333345666666648 PP

                                 GAGA_bind 208 lPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG 276
                                               +PvP CsCtGa + C +WG GGWqSaCCt  +SvyPLP+++ ++g R++grKmS+gaf+k+L++L ++G
  evm_27.model.AmTr_v1.0_scaffold00006.175 263 MPVPYCSCTGANHICHRWGDGGWQSACCTPVMSVYPLPMNPYKKGYRLTGRKMSGGAFQKVLQRLGQQG 331
                                               ********************************************************************* PP

                                 GAGA_bind 277 ydlsnpvDLkdhWAkHGtnkfvtir 301
                                                d+ +p+DLkdhWAkHG nk+v i+
  evm_27.model.AmTr_v1.0_scaffold00006.175 332 VDVTKPIDLKDHWAKHGSNKYVMIK 356
                                               **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012266.4E-5036356IPR010409GAGA-binding transcriptional activator
PfamPF062175.3E-6067356IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNQASFGPLA KSQNQNFFRM PEEHSFTSIL PSHNVDGTGK DRKQLCNLIG NTSLEDRGLK  60
EFASSRMTTV KAERDAAVRE RDMAIAEKKA ATSERDSAFN QRDMALAQRE EAVMERDAAL  120
AALESLKRDH PDWHAYVAQL AHIFSSTQLG SCVREARVDQ PIENYAYNSN RADGQMGLSG  180
PSQPVVAPTD GSNPDMGPTK NGEKRKGGAW DGKKPGRRNS ATNPAKKRKP AAEKKVGIAQ  240
QNPKPTGQKR RERGSSLHKS LSMPVPYCSC TGANHICHRW GDGGWQSACC TPVMSVYPLP  300
MNPYKKGYRL TGRKMSGGAF QKVLQRLGQQ GVDVTKPIDL KDHWAKHGSN KYVMIK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844102.10.0barley B recombinant-like protein D isoform X3
TrEMBLW1P7C90.0W1P7C9_AMBTC; Uncharacterized protein
STRINGERN057770.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1751422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.23e-54basic pentacysteine 4
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]