PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.196
Common NameAMTR_s00006p00257020
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 966aa    MW: 107038 Da    PI: 6.708
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.196genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.21.4e-08351399355
                                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  evm_27.model.AmTr_v1.0_scaffold00006.196 351 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 399
                                               58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.28E-10346403No hitNo description
SuperFamilySSF474598.11E-15346404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-15349403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-5351399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-10354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS513757.574457487IPR002885Pentatricopeptide repeat
PfamPF015350.022462488IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.912488518IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.0E-5490521IPR002885Pentatricopeptide repeat
PfamPF015351.9E-6490516IPR002885Pentatricopeptide repeat
PfamPF130413.7E-9519562IPR002885Pentatricopeptide repeat
PROSITE profilePS5137510.424519553IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.2E-6521554IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.5E-7525693IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513757.695589619IPR002885Pentatricopeptide repeat
PfamPF128543.3E-11619647IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.836620654IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007562.3E-9622650IPR002885Pentatricopeptide repeat
PfamPF130411.1E-9653698IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.1E-5655682IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.213655687IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.349688722IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.566723753IPR002885Pentatricopeptide repeat
PfamPF130413.4E-11753799IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.31754788IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007565.7E-6756789IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.283789823IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.785824854IPR002885Pentatricopeptide repeat
PfamPF015350.11829853IPR002885Pentatricopeptide repeat
Gene3DG3DSA:1.25.40.101.5E-7853885IPR011990Tetratricopeptide-like helical domain
PfamPF130415.2E-10855902IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.255855889IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.4E-7857890IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.783890920IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 966 aa     Download sequence    Send to blast
MDSSDKDKFG LDKGNTDHLD YPSSTAPPMW RFPIPPLNMV SSDNPHIWDS HSTMAHNLTF  60
HENSLQTSSS SLNATAMREI VSGSPKLATE GEIGVERGFE MGWNPLNSMP KGGLFIPTGG  120
PIAPQTLAQF STDSAFVERA ARFSCFNGNF SDIITPFSVP DVMSYTKNGG LQNQMPEILN  180
HNTVTLASNG AQTENNKMDG AEASREISSS RPLDTSIEAC ETNFGGMLMA SAQKNGDEER  240
EAIGATNNES DGAEFSGGQD ERPSSVENAS MSRTLKKRKR STQAEDQMEG ALNASSDIPN  300
ESVDAKLSGD QNPNPNASKS AAKQEKDHSQ NPDTPKEDYI HVRARRGQAT NSHSLAERVR  360
REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEHPPILSP QKPNLQTSMT  420
NLSALLSSLL KQLPDPSKPH HGKKLHCLIL KTVENTDTFV TNNLINLYAK SWNLSYARRV  480
FDRMPHKNLI SWNSMITGYS KWGFLREMEN LFKLMPLRDG VSWNAVLSGY ANWGDGKTAI  540
KVYQEMLHNS QTPNRITFSL LLILSSKQFL EILGRQIHGQ IIRIGFESNP FVTSPLIDMY  600
VKCSNLEGAR RVFDELSERN SVSYNTMITG YCKCGMVEEA KRIFNKMPER ERDSVSWTTM  660
ITGYMQNGHS REALELFRGM KFADSASDQF TFGSVLTAIG ALMALKQGKE IHAYIIRTNY  720
QSNLFAGSAL VDMYSKCGAI KSAETIFTQI PQKNVISWTA MLVGYAQNGF NEEAMRLFCE  780
LQRNGIEPDD YTLGSVISAS ASLASMEEGS QFHCKSVITG LNSFLTVANA IVTMYAKCGS  840
IEEAQRMFAV MEVRDQVSWT ALISGYAQQG NAKETIELYE KMLSTNLKPD GVTFIAVLSA  900
CSRGGLVELG IRYYDSMIKA HEINNFLNSK FSSLYRLSMM AVQMNLVYKA KHNSDVCDLC  960
SVVVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5iww_D2e-7342692016332PLS9-PPR
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275280KKRKRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522791.10.0LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g68930
TrEMBLW1PCX30.0W1PCX3_AMBTC; Uncharacterized protein
STRINGERN057980.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.34e-62bHLH family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]