PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.213
Common NameAMTR_s00006p00259200, LOC18434001
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bZIP
Protein Properties Length: 198aa    MW: 22449.4 Da    PI: 6.9422
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.213genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.6e-1362117358
                                               XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                                    bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 
                                               + +r rr+ +NRe+ArrsR RK+  ++eL + v  L +eN++L+++l+  +++ +k
  evm_27.model.AmTr_v1.0_scaffold00006.213  62 DERRRRRMLSNRESARRSRMRKQRHLDELWTTVLRLRSENRQLIEKLNVTSEHHEK 117
                                               56899*****************************************9988887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-1056117No hitNo description
SMARTSM003386.6E-1560124IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.7662125IPR004827Basic-leucine zipper domain
PfamPF001702.3E-1063117IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.41E-1164114No hitNo description
PROSITE patternPS0003606782IPR004827Basic-leucine zipper domain
CDDcd147021.20E-1669115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MHPGSALAAH FSEPMYALDP QLSPFPIMNN CGLPTLHYPN PMQSLCMSNS GSDEASEERQ  60
QDERRRRRML SNRESARRSR MRKQRHLDEL WTTVLRLRSE NRQLIEKLNV TSEHHEKVMI  120
ENESLRAEVT DLRRMLENMR EKGGECVQQP GVGVVPLPLS AFSLLRDFEE VSCNTAHLKA  180
EAACQSSSIA SSIDPLH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17683RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006844140.11e-144basic leucine zipper 43
TrEMBLW1PFH81e-143W1PFH8_AMBTC; Uncharacterized protein
STRINGERN058151e-143(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31041129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-17basic leucine-zipper 42
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]