PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00006.298
Common NameAMTR_s00006p00267240
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 244aa    MW: 26920.8 Da    PI: 8.401
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00006.298genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-165297148
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                              rg+++ eE+  ++ ++  lG++ W++Ia++++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00006.298 52 RGNFSIEEETAIITLHSILGNK-WSAIAARLP-GRTDNEIKNHWNTHL 97
                                              89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-7530IPR009057Homeodomain-like
PROSITE profilePS500906.795946IPR017877Myb-like domain
SuperFamilySSF466898.99E-231293IPR009057Homeodomain-like
SMARTSM007170.0111348IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-103357IPR009057Homeodomain-like
PROSITE profilePS5129425.97747101IPR017930Myb domain
SMARTSM007171.1E-145199IPR001005SANT/Myb domain
PfamPF002499.2E-155297IPR001005SANT/Myb domain
CDDcd001671.85E-115497No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2158101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTRAPCCDKS GTKKGPWTPE EDQKLVEYIR LLRCGKSCRL RWTNYLRPDI KRGNFSIEEE  60
TAIITLHSIL GNKWSAIAAR LPGRTDNEIK NHWNTHLKKR LLKMGIDPLT HESIASPDPP  120
NMDQGLSFSA IMSQAGTPTN HFGSQSVRPM NMSGGFCLQE PIHDGDQVNY SGLSKFMEGH  180
GCYLGTMASS MSKELESETA MGQVWPTDGE RIGHGCIEGK GQYWSGLLKC VAAVMKPGGF  240
MKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141017108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020522622.11e-180transcription factor MYB6
TrEMBLW1PFQ60.0W1PFQ6_AMBTC; Uncharacterized protein
STRINGERN059000.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.16e-64myb domain protein 41
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]