PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00007.18
Common NameAMTR_s00007p00041830
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family TCP
Protein Properties Length: 332aa    MW: 36278.4 Da    PI: 7.2225
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00007.18genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.71.2e-35120191172
                                      TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..... 65 
                                              a+g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++akpai+el +      
  evm_27.model.AmTr_v1.0_scaffold00007.18 120 ATGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKPAIDELKKRthgqs 189
                                              589************************************************************9955432 PP

                                      TCP  66 ssssase 72 
                                              s     +
  evm_27.model.AmTr_v1.0_scaffold00007.18 190 S-----S 191
                                              1.....1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.8E-32121188IPR005333Transcription factor, TCP
PROSITE profilePS5136933.738123181IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MLSSLALCCV SALAVEAHLW LTHEVINNPN LEGERDPNLN QRKPPLNLPP FFQPPLSQTH  60
HHYQTPWLSP FPNNAQTSGQ TSLGNQPENS SENQRQRLSF QSRGGGGEII EVEGGHILRA  120
TGRKDRHSKV CTAKGPRDRR VRLAAHTAIQ FYDVQDRLGY DRPSKAVDWL INKAKPAIDE  180
LKKRTHGQSS SHGNAPCPFG EVDLGGAPHK RSASLLNDQT QLPFSSSGAE VPQLDFLPPN  240
QRPFLEQGIQ QGWAQMEVGS SFMSGFHGVS SSFPEGGTLQ SSSAESYLGL ISPVGFVPGV  300
YPGFRIPARF RGDEEQDDAK LSDPPSTFAH H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A7e-20128181154Putative transcription factor PCF6
5zkt_B7e-20128181154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KKRTH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011623141.10.0transcription factor PCF5, partial
TrEMBLW1P5T00.0W1P5T0_AMBTC; Uncharacterized protein
STRINGERN052070.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-34TCP family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]